Bed15TrackLine-class {rtracklayer} | R Documentation |
Class "Bed15TrackLine"
Description
A UCSC track line for graphical tracks.
Objects from the Class
Objects can be created by calls of the form new("Bed15TrackLine",
...)
or parsed from a character vector track line with
as(text, "Bed15TrackLine")
.
Slots
expStep
:A
"numeric"
scalar indicating the step size for the heatmap color gradient.expScale
:A positive
"numeric"
scalar indicating the range of the data to be[-expScale, expScale]
for determining the heatmap color gradient.expNames
:A
"character"
vector naming the the experimental samples.name
:Object of class
"character"
specifying the name of the track.description
:Object of class
"character"
describing the track.visibility
:Object of class
"character"
indicating the default visible mode of the track, seeUCSCTrackModes
.color
:Object of class
"integer"
representing the track color (as fromcol2rgb
).priority
:Object of class
"numeric"
specifying the rank of this track.
Extends
Class "TrackLine"
, directly.
Methods
- as(object, "character")
Export line to its string representation.
Author(s)
Michael Lawrence
References
Official documentation: https://genomewiki.ucsc.edu/index.php/Microarray_track.
See Also
export.bed15
for exporting bed15 tracks.